Cookie Dough Cheesecake is the ultimate dessert if you love rich, indulgent treats! It combines a creamy cheesecake filling with soft chunks of cookie dough and plenty of chocolate chips.

Instead of being overly sweet or dense, this version balances texture and flavor perfectly. Plus, it includes better-for-you ingredients like coconut sugar and honey while still tasting like a bakery-quality dessert!

Cookie dough cheesecake.

Whether you are making it for a celebration or just craving something special, this recipe delivers every time!

Why This Recipe Works

  • First, the applesauce adds moisture without making the cookie dough greasy. As a result, you get a soft texture that holds its shape.
  • In addition, the honey creates a smooth and balanced sweetness in the cheesecake filling. This helps avoid the overly sugary taste found in many recipes.
  • Meanwhile, arrowroot powder stabilizes the filling, which leads to clean and professional-looking slices.
  • Most importantly, the water bath ensures even baking and prevents cracks. Because of this, the cheesecake stays creamy throughout.
  • Finally, chilling the cheesecake overnight allows it to fully set, giving you the perfect texture for slicing and serving.

Ingredients

  • 2 sticks unsalted butter, room temperature
  • 1.5 cups coconut sugar or light brown sugar
  • ½ cup unsweetened applesauce
  • 1 tsp vanilla extract
  • 3 cups gluten free flour
  • 1 tsp baking soda
  • 1 tsp sea salt
  • 1 cup dark chocolate chips

Cheesecake Filling

  • 16 ounces cream cheese, room temperature
  • 1 cup sour cream
  • ½ cup honey
  • 2 eggs
  • 1 tbsp vanilla extract
  • 1 tbsp arrowroot powder
  • ½ cup mini dark chocolate chips

Chocolate Ganache

  • 1 cup heavy cream
  • 1 cup dark chocolate chips

Step-by-Step Instructions

Start by creaming the butter and coconut sugar until smooth. Then, mix in the applesauce and vanilla extract until fully combined.

Next, add the flour, baking soda, and salt. Stir until a thick dough forms, and fold in the chocolate chips.

After that, press half of the dough into your prepared pan and bake until lightly golden.


Prepare the Cheesecake Filling

While the crust cools, beat the cream cheese and sour cream until smooth and creamy. Then, add the honey, eggs, vanilla, and arrowroot powder.

Be careful not to overmix at this stage, as it can introduce too much air into the batter. Finally, fold in the mini chocolate chips.


Assemble the Cheesecake

Once the crust is ready, pour half of the cheesecake filling over it. Then, add chilled cookie dough balls evenly across the surface.

Afterward, pour the remaining cheesecake batter on top and smooth it out into an even layer.


Bake Using a Water Bath

Reduce the oven temperature and place the cheesecake into a water bath. This step helps create a smooth, crack-free texture.

Bake until the edges are set but the center still has a slight jiggle. Then, allow it to cool gradually before transferring it to the fridge.


Chill and Add Ganache

After chilling overnight, prepare the ganache by heating the cream and mixing it with chocolate chips.

Let it cool slightly before pouring it over the cheesecake. Finally, top with the remaining cookie dough pieces before serving.

Scoops of dough on ganache.

Baking Time and Texture Guide

StageWhat to Look For
Crust bakedLight golden edges
Cheesecake doneSlight jiggle in center
Fully chilledFirm and sliceable

Pro Tips for Perfect Cheesecake

Do not overmix the batter or it will crack

Always use room temperature ingredients

Keep the water bath halfway up the pan

Let this Cookie Dough Cheesecake cool slowly to prevent sinking

Chill overnight for best texture

Sliced cheesecake on plate.

Troubleshooting Guide

ProblemCauseFix
Cracks on topOvermixing or no water bathMix gently and always use water bath
Dense textureOverbakingRemove when center jiggles
Soggy crustWater leakageWrap pan in foil
Cheesecake sinkingRapid coolingCool gradually

Storage and Freezing

Store this Cookie Dough Cheesecake in the refrigerator for up to 4 days.

To freeze, wrap slices tightly and freeze up to 90 days. Thaw overnight in the fridge before serving.

Frequently Asked Questions

Is cookie dough in cheesecake safe to eat?

Yes, as long as you heat treat the flour to remove bacteria.

Do I have to use a water bath?

It is strongly recommended for a smooth, crack free cheesecake.

Can I make this ahead of time?

Yes, it actually tastes better the next day after chilling overnight.

Can I use store-bought cookie dough?

You can, but most store-bought dough contains raw eggs and untreated flour. If you use it, ensure it is labeled “safe to eat raw” or “edible” to maintain the best texture and safety.

Why did my cheesecake crack?

Cracks are usually caused by overmixing the eggs or cooling the cake too quickly. Follow the “Slow Cool” method in step 7 to ensure a smooth surface every time.

Slice of cookie dough cheesecake.

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If you make this Cookie Dough Cheesecake brownie recipe, I would really appreciate a review! You can find me on Instagram, Facebook, and Pinterest. Join my exclusive Facebook Group for a behind the scenes look. I would love for you to follow along! For more ideas, check out these Dessert Recipes.

Cookie dough cheesecake.

Get the Recipe: Cookie Dough Cheesecake

Enjoy the sweet, melt-in-your-mouth taste of homemade cookie dough swirled into silky cream cheese. Topped with dark chocolate ganache, this treat is rich, bold, and buttery. A dream come true for every dessert lover!
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Ingredients

Cookie Dough

Cheesecake Filling

  • 16 ounces cream cheese, room temperature
  • 1 cup sour cream
  • ½ cup honey
  • 2 eggs
  • 1 tbsp vanilla extract
  • 1 tbsp arrowroot powder
  • ½ cup mini dark chocolate chips

Chocolate Ganache

Instructions 

  • First, preheat your oven to 350 degrees Fahrenheit. Cut a circle of parchment paper and place it in the bottom of a 9 inch springform pan. In addition, generously spray with nonstick spray.
  • Then, make the cookie dough. In a stand mixer, add the room temperature butter and coconut sugar. Beat until creamy and mixed. Then, add in the applesauce and vanilla. Stir until combined.
  • Mix in the flour, baking soda, and salt until a thick dough is formed. Then, fold in the chocolate chips.
  • Take HALF of this mixture and press it into the bottom of the lined springform pan. It should be no more than ½ inch thick. Take the other HALF of the cookie dough, roll it into 1 inch balls, and place those in the fridge while you make the cheesecake filling.
  • Bake the crust for 15 to 18 minutes, or until gently golden brown along the edges.
  • For the cheesecake filling, add the room temperature cream cheese and sour cream to the bowl of a stand mixer. Beat until creamy.
  • Then, add in the honey, eggs, vanilla, and arrowroot powder. Mix together until just mixed. Do not over mix.
  • Gently fold in the mini chocolate chips.
  • Once the crust has baked, pour HALF of the cheesecake mixture on top. Remove the cookie dough balls from the fridge. Sprinkle 10 to 12 cookie dough balls on top of the cheesecake filling. Then, pour the remainder of the cheesecake filling on top. Smooth into an even layer.
  • Turn the oven down to 325 degrees Fahrenheit. Place the springform pan into a larger roasting pan with edges. Pour hot water down into the roasting pan so that the water comes up about halfway on the cheesecake pan.
  • Bake for 60 to 70 minutes, or until the edges are just barely set and the middle is still jiggly. Remove from the oven. Allow the cheesecake to sit in the water bath for another 30 minutes at room temperature.
  • Then, cool overnight in the fridge.
  • When ready to serve, make the chocolate ganache. In a saucepan, add the heavy cream over medium heat. Once lightly bubbling, add in the chocolate chips. Stir until creamy. Remove from the heat and allow the ganache to cool down for 20 minutes.
  • Then, pour the ganache on top of the cooled cheesecake. Add the remaining cookie dough balls on top and serve!

Notes

  • If you are not gluten free, feel free to use all purpose flour.
  • For safety concerns, I recommend heat treating your flour. Simply microwave your flour for 45 seconds to remove any bacteria.
  • The cheesecake should be slightly jiggly when you remove it from the oven.
  • Allow the cheesecake to fully cool overnight. This is vital.
  • Store any leftovers in the fridge for up to 4 days. Freeze for 90 days if needed.
Calories: 548kcal, Carbohydrates: 79g, Protein: 8g, Fat: 37g, Saturated Fat: 23g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 7g, Trans Fat: 0.003g, Cholesterol: 99mg, Sodium: 474mg, Potassium: 167mg, Fiber: 6g, Sugar: 32g, Vitamin A: 962IU, Vitamin C: 1mg, Calcium: 118mg, Iron: 3mg